PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42752.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 446aa    MW: 48878.7 Da    PI: 8.0492
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42752.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.1e-41125200277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv+gC++dls+akeyh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l  fD++krsCr+rLa+hn+rrrk+q
  Dca42752.1 125 CQVHGCSKDLSSAKEYHKRHKVCDAHSKTSKVVVNGIEQRFCQQCSRFHLLGWFDDGKRSCRKRLAGHNQRRRKPQ 200
                 **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-32119186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.616122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-38123202IPR004333Transcription factor, SBP-box
PfamPF031108.8E-31125198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGFDFRTPSS FDNSMLVQSQ QSVENYTFSQ VGLSEMITTQ QFHSDSSKNV GHIVSPSMVI  60
SNPVSWEEES SSVVESNSRE SSLIDLKLGG FGDNSNSSRA TPSSESSTPV RRVRGTRFSS  120
QTVYCQVHGC SKDLSSAKEY HKRHKVCDAH SKTSKVVVNG IEQRFCQQCS RFHLLGWFDD  180
GKRSCRKRLA GHNQRRRKPQ LGYNNGRAGR SFSYAGSVGS KFEGNNLTPA SFISQDALPR  240
GVSHAEKYGT NVWGTHVKVE DGSDYSQKSS NIFVDGPTQE KPIFPHFNTG DLYSSINNLS  300
NNRQNVAMNS LESQDLTYTH EVHGVSESGC ALSLLSSQSR NSPDHALVIP NISTHYEVSE  360
VSEKLIEVGP QGLSSRSPNW YSLSGRNNES SVAGLSNGDS ASSSFGNVIL HCSDFASTKG  420
TTIDLLQLSS QLQRVENQRQ TASGKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28119198584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838067.11e-131squamosa promoter-binding-like protein 13A
RefseqXP_021838068.11e-131squamosa promoter-binding-like protein 13A
TrEMBLA0A0K9QIV61e-130A0A0K9QIV6_SPIOL; Uncharacterized protein
STRINGEOY221291e-123(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-54SBP family protein