PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42755.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28650.3 Da    PI: 8.0885
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42755.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye+ss
  Dca42755.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFSS 59
                79***********************************************96 PP
2K-box95.67.6e-328517312100
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++++  +qe+ kLk+++e Lq++qR+llGedL +L++k+L qLe+q+e slk iRs+K++ ll+q+ +lq+ke+ l e+n++L +klee
  Dca42755.1  85 NDSQANYQEYLKLKARVEVLQQSQRNLLGEDLAPLNIKDLDQLEHQVEMSLKAIRSTKTQQLLDQLADLQRKEQTLAENNRNLMQKLEE 173
                 5678999*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
CDDcd002658.77E-39278No hitNo description
SuperFamilySSF554551.05E-31275IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.41787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFSSS  60
SSILTTIEKY HRCSYGALEA SGALNDSQAN YQEYLKLKAR VEVLQQSQRN LLGEDLAPLN  120
IKDLDQLEHQ VEMSLKAIRS TKTQQLLDQL ADLQRKEQTL AENNRNLMQK LEESSPHNQF  180
PSRITWEGED HQNIPFNRIP TQSEAFFHPL CSNQPLQISY NHQQMGSNEA NVATTSQQQA  240
SGYNIHGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-22751711101Developmental protein SEPALLATA 3
4ox0_B2e-22751711101Developmental protein SEPALLATA 3
4ox0_C2e-22751711101Developmental protein SEPALLATA 3
4ox0_D2e-22751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730975.11e-132MADS-box protein CMB1-like
SwissprotQ7Y0401e-103EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A0J8CB491e-128A0A0J8CB49_BETVU; Uncharacterized protein
STRINGXP_010678363.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-84MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]