PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42761.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 273aa    MW: 29545.2 Da    PI: 8.6132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42761.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.3e-072302355
                HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Dca42761.1  2 LRELIPHS----DQKRDKASFLLEVIEYIQFLQ 30
                9******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.258129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-8238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-6233No hitNo description
PfamPF000101.6E-4230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-11237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLRELIPHSD QKRDKASFLL EVIEYIQFLQ EKVNRYEGPY PPGWNGEQAK LIPWTNNHGP  60
SESFVDQARV LNPVNNPALT FGAKLDEKPT AVSLKFPRNT QAQAECSMPN SISFKTIDQQ  120
FGMASKAGPM STPIPSDVYP SLGRSCAVAA AQPSSRISDG GNTSLPESPL WQSRMSGCVP  180
SVADVKLNDQ GLALEGGTIN ISSLYSQGLL NTLTRALQTS GVDLSQASIS VQVDIGKRAS  240
NRQSSPDPKS KSVETPCTSQ SRSDHVVKRL KTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731079.11e-108transcription factor BIM1-like isoform X1
RefseqXP_021731087.11e-108transcription factor BIM1-like isoform X2
TrEMBLA0A0K9R2X11e-103A0A0K9R2X1_SPIOL; Uncharacterized protein
STRINGXP_010678382.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-47BES1-interacting Myc-like protein 2