PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4277.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 246aa MW: 28778.6 Da PI: 6.9849

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4277.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.5	3.1e-10	25	80	37	99
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d+ r W v++ +++ r+ +++GW++F+ +L+ gDf+vF++ +s f ++v+vf++ Dca4277.1 25 FTDDQPLRHWVVTV--TGG--RH-FQDGWQDFCLHYHLQLGDFLVFTH--QSHFVFHVSVFDA 80 33444458999999..444..44.899******************5..478888*9986 PP
2	B3	42	1.7e-13	154	231	7	87
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + + +++l+lpk+f+++ g+k ++ +++ de+ W++kl + + g+ +l+ GWk+F a++ + +v F+l++ Dca4277.1 154 TRASIGRSWLYLPKEFMRSSGLKRRR-CYIKIIDEKEIPWQMKL--SSSTGHAYLGCGWKDFQTAHNFRPQSVVRFQLIKA 231 555667789*********998655.69***********..99999************************9973 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.11	1	81	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.8E-10	5	80	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.12	8	81	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-11	21	79	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.49E-7	44	79	No hit	No description
PROSITE profile	PS50863	10.109	148	242	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.51E-15	148	237	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-13	148	237	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.9E-9	150	243	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-11	153	232	IPR003340	B3 DNA binding domain
CDD	cd10017	2.64E-12	160	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MQAMPVAYVK QLDTEGSLPH SVVLFTDDQP LRHWVVTVTG GRHFQDGWQD FCLHYHLQLG 60 DFLVFTHQSH FVFHVSVFDA VTACLRRFSC SQSEHEHRQE QVQEQVQEQV QVQVQVQVQE 120 QEQVQVQEQE QEQVQVHEQE QEQEQGISCY VTITRASIGR SWLYLPKEFM RSSGLKRRRC 180 YIKIIDEKEI PWQMKLSSST GHAYLGCGWK DFQTAHNFRP QSVVRFQLIK AGRIPVLKCL 240 QVISPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31610.1	4e-16	B3 family protein