PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4282.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-other

Protein Properties

Length: 146aa MW: 16541.1 Da PI: 10.5935

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4282.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.2e-07	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ + ++++F + +s++e +e+ + gLt +qV+ +F +R++ +k Dca4282.1 70 KRPRDLLNPKAMKYMQAVFSIKDAISKKESREIGALFGLTVTQVREYFASQRTRVRK 126 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.203	67	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-8	69	129	IPR009057	Homeodomain-like
SMART	SM00389	5.8E-4	69	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-7	70	136	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-4	70	126	IPR001356	Homeobox domain
CDD	cd00086	1.24E-4	70	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MELMLKDYPS ELEIGASMAS FLNSMESQKQ LFHRQIDQLR DIVVTQCKLT GVNPLSQEMA 60 AGALSIKIGK RPRDLLNPKA MKYMQAVFSI KDAISKKESR EIGALFGLTV TQVREYFASQ 120 RTRVRKIVRI SREKALRASA TXPVEF

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849184.1	7e-75	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	3e-61	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0K9RS10	2e-73	A0A0K9RS10_SPIOL; Uncharacterized protein
STRING	XP_010684371.1	8e-74	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-63	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]