PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43407.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 258aa    MW: 29423.9 Da    PI: 5.816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43407.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-131462146
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46
                     rg+W++eEd  l+++++ +G+  +W + +++     gRt++++k++w++
       Dca43407.1 14 RGPWSPEEDTNLKNYIQIHGTSgNWISLPHKAAqlPGRTDNDIKNYWNT 62
                     89******************99*9999988888888***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19569IPR009057Homeodomain-like
SuperFamilySSF466897.18E-13872IPR009057Homeodomain-like
PROSITE profilePS5129417.151968IPR017930Myb domain
SMARTSM007172.2E-101366IPR001005SANT/Myb domain
PfamPF002492.7E-111462IPR001005SANT/Myb domain
CDDcd001673.87E-101664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTNLKNYIQ IHGTSGNWIS LPHKAAQLPG RTDNDIKNYW  60
NTKLKKKLIM TNSSSSSNNN NNNNNNKMVS STTTTTTTYN ETIKKYNQDD HHNTMMMIPS  120
SISSLPLYQC NPTPFYNSPF SNNTTITMSF NNNNNNNNNN NNNNINNNTL LHPSLQTTMH  180
EKDNTTLHDN NNNNDKVGIW GQNGHQSNSL LDYGLEEIKQ LISCNNTNDD DDDDDNCLDQ  240
NKFVFSEEDN SKVMMYYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HVJ08e-37A0A498HVJ0_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-29myb domain protein 36