PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43438.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 293aa    MW: 32129.6 Da    PI: 4.2038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43438.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044268290223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+k+F++   L+ H +  H
  Dca43438.1 268 PCGLCKKTFKSEVGLQDHTQAkH 290
                 6*****************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743267293IPR007087Zinc finger, C2H2
PROSITE patternPS000280269290IPR007087Zinc finger, C2H2
PfamPF128742.8E-4269289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAETKFWGVE VSGKEPCKII LDPGFVIHVS QVTLGDLKNT DESVIIHVKV DDDKKFVLGI  60
LSKDTPQLSL DLVFDDEFEI SHNCKNGSIH VLGYQAVSAE LYPFFLFLLF LLVFIFDIRL  120
MPNIESSDEE EEDFPVAKEN GLLAAPAAKV PEVTPKMEPK PELKTESDED DSNNEDDDFE  180
DEDGSDEDEG ISDSDDDEDE SDESEEETPA KVAADAGKKR PNAADVKTPQ SKKAKLATPQ  240
KTDNKKGPQP TKGGADDKTP KSAGSNIPCG LCKKTFKSEV GLQDHTQAKH SSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690019.12e-56PREDICTED: histone deacetylase HDT1
STRINGXP_010690019.17e-56(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-22histone deacetylase 3