PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43462.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 877aa MW: 99263.5 Da PI: 7.0482

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43462.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	762	854	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 A e GF ++k+++ ++ +++ e + f+Cs++g++++ + ek +++ +++++C+ +++ +++ d+kw+v +HnHel+ Dca43462.1 762 AFENGFALVKATNGQKnRKQPELLASYFRCSRHGRSKSVYDP-EKPKKKPRTQKCDCDFRVRAVQNYhsiDNKWVVLWNIvifkgfGNHNHELT 854 77899999887655488999**********999888.77777778889999999987666567889988754333566889***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03732	5.0E-18	318	412	IPR005162	Retrotransposon gag domain
SuperFamily	SSF57756	4.71E-5	503	534	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.96	513	527	IPR001878	Zinc finger, CCHC-type
Pfam	PF03101	1.6E-5	762	854	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MCDRAAFAVY QPKVWESGDC GRAAPHDCLW CGQIYSADYP PLIFPHTASI ESWSCVLISG 60 GWSALTFLPW SIREANSYLL NFTKACDASV DKLKHVMHYN KDGIKEFFCE SCALSKHHAL 120 PFPKSTSYAS NRFDLVYIDV RGFGGPEPKP ESSGARTSTE TSRPSSSLYE SLGSSQELLP 180 FDSEPELTFH RTRKFFKELA EAKDPETVEY LYVEFRATQS SYEEDTPPVI VTVSTPPVVM 240 PKLANHSKLK ATQIPKGTPG PEINANYSIP PALIGLIERS QFGGAPTEDP HSHIVTFCDY 300 CSTMKTTGVT QAQLREMLFP FSLRDQAKRW LTTLDRTAAG VTDWDSLMLA FYNKFFPPEK 360 TVLLRIQITS FRQSSMENLS EAWERYKQYT RDCPHHNLDE WYLVVTFYNG LSDESRQILD 420 STAGGRFTHN VDDDKAWQLI EDMTVHSAQY AKPRAPTKGG KYEVDVLTRI EAQMSQMSQQ 480 INGIQAKVSG SSSKPVYEVN AVGHHFSSPT SICEHCGEHG HYFQDCRTSM EQVHAFQSQQ 540 GNPCSNTYNK GMRNHPNFSY RSQNLLNPGP QPYVPPPFRA GNSGAPAYNP SYAPPPRPSP 600 VASDPLAEMR TMMMAMQKMQ METNQAVKHL ETQRGAHDGP AMPVLEELVK EDVMGNEEED 660 TAEKTKQTSL PINRQPVRDR PAQRQQVTGE VSKEAPEIQI KLPFPSRVHQ AKVDPTLANS 720 SRSSKDSFED FRGDDVDYNP LFVTKVCFKD RDEAFDWANN VAFENGFALV KATNGQKNRK 780 QPELLASYFR CSRHGRSKSV YDPEKPKKKP RTQKCDCDFR VRAVQNYHSI DNKWVVLWNI 840 VIFKGFGNHN HELTKYKDGH RHYAGLDEEE KAYIKQQ

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MCDRAAFAVY QPKVWESGDC GRAAPHDCLW CGQIYSADYP PLIFPHTASI ESWSCVLISG  60
GWSALTFLPW SIREANSYLL NFTKACDASV DKLKHVMHYN KDGIKEFFCE SCALSKHHAL  120
PFPKSTSYAS NRFDLVYIDV RGFGGPEPKP ESSGARTSTE TSRPSSSLYE SLGSSQELLP  180
FDSEPELTFH RTRKFFKELA EAKDPETVEY LYVEFRATQS SYEEDTPPVI VTVSTPPVVM  240
PKLANHSKLK ATQIPKGTPG PEINANYSIP PALIGLIERS QFGGAPTEDP HSHIVTFCDY  300
CSTMKTTGVT QAQLREMLFP FSLRDQAKRW LTTLDRTAAG VTDWDSLMLA FYNKFFPPEK  360
TVLLRIQITS FRQSSMENLS EAWERYKQYT RDCPHHNLDE WYLVVTFYNG LSDESRQILD  420
STAGGRFTHN VDDDKAWQLI EDMTVHSAQY AKPRAPTKGG KYEVDVLTRI EAQMSQMSQQ  480
INGIQAKVSG SSSKPVYEVN AVGHHFSSPT SICEHCGEHG HYFQDCRTSM EQVHAFQSQQ  540
GNPCSNTYNK GMRNHPNFSY RSQNLLNPGP QPYVPPPFRA GNSGAPAYNP SYAPPPRPSP  600
VASDPLAEMR TMMMAMQKMQ METNQAVKHL ETQRGAHDGP AMPVLEELVK EDVMGNEEED  660
TAEKTKQTSL PINRQPVRDR PAQRQQVTGE VSKEAPEIQI KLPFPSRVHQ AKVDPTLANS  720
SRSSKDSFED FRGDDVDYNP LFVTKVCFKD RDEAFDWANN VAFENGFALV KATNGQKNRK  780
QPELLASYFR CSRHGRSKSV YDPEKPKKKP RTQKCDCDFR VRAVQNYHSI DNKWVVLWNI  840
VIFKGFGNHN HELTKYKDGH RHYAGLDEEE KAYIKQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	804	810	KPKKKPR
2	805	811	PKKKPRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-