PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43492.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 529aa    MW: 57168.1 Da    PI: 6.967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43492.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.6e-11372430563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +a+ +s++
  Dca43492.1 372 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQNEATTLSAQLTLLQRDSAAFTSQN 430
                 9************************************************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-18368432IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875370433IPR004827Basic-leucine zipper domain
PfamPF001702.2E-9372430IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.8E-11372426No hitNo description
SuperFamilySSF579596.19E-11372422No hitNo description
CDDcd147033.94E-25373424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSQIRPPLPQ NSQNLQNFGP DSGGKRSGIP PSHPPISPYS HVPSPRLGSQ NLGRGSSHSR  60
SLSQPSSFFS NDSLPPLSPS PYHNSNSPPN GTEGLNSLSG DGCVNLVLPP STFGRGSVNS  120
LHITEGLPPR KLHRRSVSDI PFGFDSMSSS PPVSMGVGGN HGGLERSLSG GEYSGSAKPA  180
QLLKRESSWD KNREGNTMDG EVVEDLLSAY IIMDSIDVLN SSRTDDMTGN ENRDDMNSGA  240
SGSKTNGCDS SDNEAESSVN ESGSSGHRPM RTTTSGDRKR SAGGEAASNT RHYRSVSMDS  300
FIGSMSFGDE SPKLPPSPST GIAQLSLKDP ASATVKSNAY SLEFGNGEFT EAEMKKIMGN  360
DKLAEIALTD PKRAKRILAN RQSAARSKER KMRYISELEH KVQTLQNEAT TLSAQLTLLQ  420
RDSAAFTSQN NELKFRLQAM EQQAQLRDAL NEALTAEIQR LKIVAGELSP ESMSKCFGQQ  480
LYINPQQMFQ LQQIQKPSTQ TNITQLKQPS HEQPKIQDSE HNSGSMTES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665860.10.0PREDICTED: uncharacterized protein LOC104883107
TrEMBLA0A0J8B6710.0A0A0J8B671_BETVU; Uncharacterized protein
STRINGXP_010665860.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-113bZIP family protein