PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43573.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 184aa MW: 20464.3 Da PI: 11.2051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43573.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	86	105	11	30
HHHHHHHHHHHHHHCTSCCC CS HLH 11 rRRdriNsafeeLrellPka 30 + R+r+Ns+++eLr+ lPk Dca43573.1 86 NLRRRLNSRIQELRKDLPKK 105 67*************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04483	1.3E-15	125	183	IPR007572	Uncharacterised protein family Ycf20

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009507	Cellular Component	chloroplast

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVLTRGIGLL HYPTTTRALS TKISVLRLSL LKAVAKLPFI QVYGGSMFKK RKISGWSIKS 60 SADGRGLDPL ADSSDGRTRL LKTIQNLRRR LNSRIQELRK DLPKKFLFFL VGFYCATAFA 120 TVIGQTGDWD ILSAAVAVAV VEGIGALMYK LSLPSLNRAR SVIVMFNYWK AGLKLGLFLD 180 SFKY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849343.1	1e-76	ycf20-like protein
TrEMBL	A0A0K9Q9H4	2e-75	A0A0K9Q9H4_SPIOL; Uncharacterized protein
STRING	XP_010692203.1	1e-66	(Beta vulgaris)