PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43721.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

BBR-BPC

Protein Properties

Length: 283aa MW: 32821.6 Da PI: 9.7036

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43721.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	38.6	3.7e-12	60	150	23	113
GAGA_bind 23 nlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113 ++ +l+ +iaerda+i+ern+a+ ek+ a+++r +a qr+ a+ +rn+a++er+n++ +l++ ++ + p + ++t+ +d l + Dca43721.1 60 DIYPDLLNIIAERDAAIEERNQAFLEKERAFQDRHVAIEQRNFAIRQRNDAVLERNNAFKSLQQSMLESIGQPPCKRLKRDDTTALDVLCK 150 366789*******************************************************999766654444444444444555554433 PP
2	GAGA_bind	194	1.7e-59	164	283	185	301
GAGA_bind 185 erskaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg.aRiagrKmSqgafkklLekLaaeGydls 280 +++ +++k + + + +++++De+ +Pv CsCtG+ r CYkWG+GGWqS CCt tiS +PLP ++++r+ +R +grKm +++f+klL++LaaeGyd+s Dca43721.1 164 NSVPRKRKVTRVpdNKDKINFDETVMPVTGCSCTGVFRPCYKWGSGGWQSCCCTQTISAFPLPHVPNKRQrSRKGGRKMKGSVFSKLLSRLAAEGYDFS 262 345555555555446789**********************************************998549*********************** PP GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301 pvDLkdhW kHGtn+++ti+ Dca43721.1 263 LPVDLKDHWSKHGTNRYITIK 283 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	6.6E-6	41	170	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.6E-66	49	283	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.1E-56	178	283	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEIPLGRMRR RRTAGDLLGN VMDTEKEQLF LRRKYENLKE QSLTPWYMMQ QQYQEQDVLD 60 IYPDLLNIIA ERDAAIEERN QAFLEKERAF QDRHVAIEQR NFAIRQRNDA VLERNNAFKS 120 LQQSMLESIG QPPCKRLKRD DTTALDVLCK TMTSSECNES PHVNSVPRKR KVTRVPDNKD 180 KINFDETVMP VTGCSCTGVF RPCYKWGSGG WQSCCCTQTI SAFPLPHVPN KRQRSRKGGR 240 KMKGSVFSKL LSRLAAEGYD FSLPVDLKDH WSKHGTNRYI TIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	KRQRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667727.1	3e-88	PREDICTED: protein BASIC PENTACYSTEINE4
Refseq	XP_019103212.1	3e-88	PREDICTED: protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	5e-66	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A0J8B270	7e-87	A0A0J8B270_BETVU; Uncharacterized protein
STRING	XP_010667727.1	1e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	2e-68	basic pentacysteine 4