PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43863.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 679aa MW: 76156.9 Da PI: 4.809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43863.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.5e-05	491	528	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i ++++eLr l+P+a Kls + L ++++++++Lq Dca43863.1 491 RQQITERINELRNLIPNA-----SKLSIDALLSRTIKHMNYLQ 528 89*************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.1E-7	9	49	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	8.3E-15	57	140	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.937	478	527	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-6	491	549	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-5	491	532	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.59E-5	491	530	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MGNGGDINKS LKSLCRKHGW CYGVFWRSHP HNPMNLTMED AYYEEEEDED AYTESVVGSM 60 LMQVHHLGQG MIGGVAVDGN HRWLFADAIS WDISEFGLQF ASGIKTIALI PVGLCGVVQL 120 ASIQQIAETR EMVDQVSKCF QETLDVVSGG NDAADQYEPF SSMTPSQKKF FQDVSTSWVN 180 TVEDVGNSLM FGSMDVQLLP YAENLKHGND NDELLIQPAL TSLVESTLNL FEEQFEVADF 240 PPSSFDTFQI NDLTQWLADS SELCITSLDT MSFDESPHTI EVDGVSLVPS RYDRVSSIQV 300 EEQVCSFKNC FSNTSNSCEK VETFAINAND DEFGVENVVG SLGQAYVISE RMSDTVAAPR 360 KGLFSELGLE HILKDEWPAN SISSSKSYND EWPPSKRRKA ESYETISNHA QHTCFLWGPE 420 LIRGQFHEFT SLKECMPKVQ SGMCVEKSYD MDAKSCITVG NSQSRKLNEP TKPMKKRAKP 480 GESKKPRPKD RQQITERINE LRNLIPNASK LSIDALLSRT IKHMNYLQNL SKHGNKIKQV 540 HEPKGNELVP KSSSGGATWA FEVGGSNVVC PIVVEDLGHP GQMLIEMLCK DRDYFMEMAN 600 IVRSFGLTIL KGVMEEQSDK IWAQFIVEAK KQVERVQVFM SLMQIFHGPT SNEIKDPEQN 660 RSNVSELWGN YQHHVVPIV

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MGNGGDINKS LKSLCRKHGW CYGVFWRSHP HNPMNLTMED AYYEEEEDED AYTESVVGSM  60
LMQVHHLGQG MIGGVAVDGN HRWLFADAIS WDISEFGLQF ASGIKTIALI PVGLCGVVQL  120
ASIQQIAETR EMVDQVSKCF QETLDVVSGG NDAADQYEPF SSMTPSQKKF FQDVSTSWVN  180
TVEDVGNSLM FGSMDVQLLP YAENLKHGND NDELLIQPAL TSLVESTLNL FEEQFEVADF  240
PPSSFDTFQI NDLTQWLADS SELCITSLDT MSFDESPHTI EVDGVSLVPS RYDRVSSIQV  300
EEQVCSFKNC FSNTSNSCEK VETFAINAND DEFGVENVVG SLGQAYVISE RMSDTVAAPR  360
KGLFSELGLE HILKDEWPAN SISSSKSYND EWPPSKRRKA ESYETISNHA QHTCFLWGPE  420
LIRGQFHEFT SLKECMPKVQ SGMCVEKSYD MDAKSCITVG NSQSRKLNEP TKPMKKRAKP  480
GESKKPRPKD RQQITERINE LRNLIPNASK LSIDALLSRT IKHMNYLQNL SKHGNKIKQV  540
HEPKGNELVP KSSSGGATWA FEVGGSNVVC PIVVEDLGHP GQMLIEMLCK DRDYFMEMAN  600
IVRSFGLTIL KGVMEEQSDK IWAQFIVEAK KQVERVQVFM SLMQIFHGPT SNEIKDPEQN  660
RSNVSELWGN YQHHVVPIV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	8e-48	conserved peptide upstream open reading frame 7