PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43953.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

M-type_MADS

Protein Properties

Length: 407aa MW: 45740 Da PI: 5.8625

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43953.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39	1e-12	11	39	13	41
HHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifs 41 f R+++i+K A ELSvLCd++va+i++ Dca43953.1 11 FQPRKTTIFKSARELSVLCDVDVALIMYN 39 667************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	3.1E-10	11	40	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-11	11	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.059	11	39	IPR002100	Transcription factor, MADS-box
CDD	cd00120	8.31E-11	11	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDNFGCPLKG FQPRKTTIFK SARELSVLCD VDVALIMYNH GSPNPEVWCS EPGSIDMIIN 60 QAYGKTIVPP KPASQLVVEG LNELVGCLAG KIEQVNEKIN LLKSCRNDNK KSTDLMSDHE 120 GMNDDDWINM IDFSTNRLEL NFQCQGMGVD DRNVNAIGFC EGGVDDTKTS DYGFDWFRVQ 180 GRLSVRDRLS VQDRLPARDR LSVQDRLPAR DRLSVQDRLS AQDGQPAQDG LSVLEIKAVW 240 LCWRRCHVYS SEFQYPLIGS FLESHKSELA RVHDAVEKFV GVQGRLSVRD RLSVQDRLPA 300 RDRLSVQDRL SAQDGQPAQD GLSVLEIKAV WLCWRRCHVY SSEFQYPLIG SFLESHKSEL 360 ARVHDAVEKF VVCFADLLCL YALRVHSANL LCVCSVSPVS PVSTDLG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDNFGCPLKG FQPRKTTIFK SARELSVLCD VDVALIMYNH GSPNPEVWCS EPGSIDMIIN  60
QAYGKTIVPP KPASQLVVEG LNELVGCLAG KIEQVNEKIN LLKSCRNDNK KSTDLMSDHE  120
GMNDDDWINM IDFSTNRLEL NFQCQGMGVD DRNVNAIGFC EGGVDDTKTS DYGFDWFRVQ  180
GRLSVRDRLS VQDRLPARDR LSVQDRLPAR DRLSVQDRLS AQDGQPAQDG LSVLEIKAVW  240
LCWRRCHVYS SEFQYPLIGS FLESHKSELA RVHDAVEKFV GVQGRLSVRD RLSVQDRLPA  300
RDRLSVQDRL SAQDGQPAQD GLSVLEIKAV WLCWRRCHVY SSEFQYPLIG SFLESHKSEL  360
ARVHDAVEKF VVCFADLLCL YALRVHSANL LCVCSVSPVS PVSTDLG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-