PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43964.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 577aa MW: 64913.6 Da PI: 8.7143

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43964.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Dca43964.1 110 FVCEICSKGFQRDQNLQLHRRGH 132 89*******************88 PP
2	zf-C2H2	11.7	0.00081	187	209	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Dca43964.1 187 WKCEKCSKKYAVQSDWKAHSKVC 209 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-6	109	132	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.2E-5	109	132	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.036	110	132	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	110	132	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	152	182	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	175	207	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.28E-6	182	207	No hit	No description
SMART	SM00355	140	187	207	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MIKQQQQQQQ DQQQVYVEEN ISNLTSPPVS GEASVSSSSN RGEPSTSIYP LHHHQQQHQQ 60 YFSQQQQQQH EQVEQLQPLP KKKRNQPGNP DPDSEVVALS PKTLLAKNRF VCEICSKGFQ 120 RDQNLQLHRR GHNLPWKLKQ RSKTEVIRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFCR 180 KHGEKKWKCE KCSKKYAVQS DWKAHSKVCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE 240 ETARAITTTV TTHPLLTNTI SALPSNSTHF ITMQQQQQQQ FQQQQQQLMN NQQQQQDNNN 300 INTLHAFPLK REQHTNFMTN LPPWLSCSPL DHLNSPSSSQ SSIIFHQQQQ QQQQQQQHHH 360 NHNHNHSHNQ VQQLHLQQQN QNQNPSNPRI GPTYTTTAAA ATTTPHMSAT ALLQQAAQMG 420 ATMSNNHSHV TDNSTTNTTP TTSTAGLFGL NLSSRDHQHQ HHPGPSPGPS SYLHDMMVNS 480 ISSSYDDAFG MGDMGGMFKN KDNTFQLGGS RDDGGGGGGG KANEGLTRDF LGLRPLSQND 540 ILTIAELSNC MATNTSNSQQ QQQQQHGQGG GHKPWQN

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MIKQQQQQQQ DQQQVYVEEN ISNLTSPPVS GEASVSSSSN RGEPSTSIYP LHHHQQQHQQ  60
YFSQQQQQQH EQVEQLQPLP KKKRNQPGNP DPDSEVVALS PKTLLAKNRF VCEICSKGFQ  120
RDQNLQLHRR GHNLPWKLKQ RSKTEVIRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFCR  180
KHGEKKWKCE KCSKKYAVQS DWKAHSKVCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE  240
ETARAITTTV TTHPLLTNTI SALPSNSTHF ITMQQQQQQQ FQQQQQQLMN NQQQQQDNNN  300
INTLHAFPLK REQHTNFMTN LPPWLSCSPL DHLNSPSSSQ SSIIFHQQQQ QQQQQQQHHH  360
NHNHNHSHNQ VQQLHLQQQN QNQNPSNPRI GPTYTTTAAA ATTTPHMSAT ALLQQAAQMG  420
ATMSNNHSHV TDNSTTNTTP TTSTAGLFGL NLSSRDHQHQ HHPGPSPGPS SYLHDMMVNS  480
ISSSYDDAFG MGDMGGMFKN KDNTFQLGGS RDDGGGGGGG KANEGLTRDF LGLRPLSQND  540
ILTIAELSNC MATNTSNSQQ QQQQQHGQGG GHKPWQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	183	244	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-34	183	244	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	149	KQRSKTEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685384.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	B9SN27	1e-160	B9SN27_RICCO; Nucleic acid binding protein, putative
STRING	XP_010685384.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	8e-92	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]