PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44085.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 226aa    MW: 25706.2 Da    PI: 7.6677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44085.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10134184558
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                 ++ +rk +NRe+ArrsR RK++  e+L++++  Le eN++     ++l+ +v++
  Dca44085.1 134 RKRKRKLSNRESARRSRMRKQQHFENLRNEANRLELENQQAT---NRLRLMVQN 184
                 6789**********************************8666...555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-10130194IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703132195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-8134186No hitNo description
PfamPF001701.7E-7134186IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-9134188No hitNo description
CDDcd147026.58E-19135183No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLSTISPIYQ AEPVLGCGKG FGYGSSLYSS SQGGFTPWEN LESFFVSQDE KFDHGSVSVS  60
KSKPEPSLNQ GNAGMGLGLD DIDQKPFCHD ETGFNHESPN QTSVLSSSSG SDDPNQNPNG  120
SGHWYGDPNQ NNERKRKRKL SNRESARRSR MRKQQHFENL RNEANRLELE NQQATNRLRL  180
MVQNVQFITS ENDKLKGEYV ILQRRLMELN QIWQIQQIHR NNTNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139ERKRKRKL
2133138RKRKRK
3146153RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.27e-25basic leucine-zipper 6