PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca44121.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 364aa MW: 41354.8 Da PI: 7.7729

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca44121.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.8e-10	79	126	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 k+ rr+++NReAAr+sR RKka++++Le +L++ + ++++ k++v Dca44121.1 79 KVNRRLAQNREAARKSRMRKKAYVQQLESSRLKLTQLEQ----QIQQTKQQV 126 899*************************98777776654....555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-7	75	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	77	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	79	126	No hit	No description
Pfam	PF00170	7.2E-7	79	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-9	81	128	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-29	168	241	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MGSTTVQVTN SATLGIYESP RAMSVWRDAS KGLMHSSPDD SSSLHAEARQ ENAFEYEYGS 60 NDGVEHTISA EDAVRLSEKV NRRLAQNREA ARKSRMRKKA YVQQLESSRL KLTQLEQQIQ 120 QTKQQVSYAN ACVRPNPGVS ANGSTGAGLA SFEMEYGHWV DEQNRHNSEL RNALQANVSE 180 IELKILVEAV LRHYYNLFRI KAVAAKTDVF YLISGMWRTS VERLFHWIGG FRPSELLNIL 240 VPQLEPLTNE QAQEIDKLRF SSRQAEDALS RGMDKLQQTV MQIMRAEMVG MEMYGFQMAS 300 ALEKLEAIEG FVNQADHLRE QTLQLMYRIL TPHQAARGLL ALGDYFHRLR ALSSLWTARP 360 RDPC

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MGSTTVQVTN SATLGIYESP RAMSVWRDAS KGLMHSSPDD SSSLHAEARQ ENAFEYEYGS  60
NDGVEHTISA EDAVRLSEKV NRRLAQNREA ARKSRMRKKA YVQQLESSRL KLTQLEQQIQ  120
QTKQQVSYAN ACVRPNPGVS ANGSTGAGLA SFEMEYGHWV DEQNRHNSEL RNALQANVSE  180
IELKILVEAV LRHYYNLFRI KAVAAKTDVF YLISGMWRTS VERLFHWIGG FRPSELLNIL  240
VPQLEPLTNE QAQEIDKLRF SSRQAEDALS RGMDKLQQTV MQIMRAEMVG MEMYGFQMAS  300
ALEKLEAIEG FVNQADHLRE QTLQLMYRIL TPHQAARGLL ALGDYFHRLR ALSSLWTARP  360
RDPC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847299.1	0.0	transcription factor TGA7-like
Swissprot	Q93ZE2	1e-126	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0K9QZU2	0.0	A0A0K9QZU2_SPIOL; Uncharacterized protein
STRING	XP_010692601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-120	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]