PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44296.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 468aa    MW: 51918.7 Da    PI: 8.2641
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44296.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0594116123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  Dca44296.1  94 FTCEICNKGFQRDQNLQLHRRGH 116
                 89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.83E-592117No hitNo description
Gene3DG3DSA:3.30.160.605.6E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01494116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09494116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355150136166IPR015880Zinc finger, C2H2-like
SMARTSM00355150171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MIEQQNNYKG FVEENLSNLT SPISGEASVS SSSKQSNVFL HQTHEQFHHS DDDDNDDGDE  60
QPPAKKKRNL PGNPDPESEV IALSPRTLQA TNRFTCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRSKTEV VKKKVYVCPE QTCVHHHPSR ALGDLTGIKK HFSRKHCDKK WKCDKCSKRY  180
AVHSDWKAHS KVCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEETARAI TTTTISSSPA  240
QTINTHFMND NNSDHHHLHA TFPLKREQHH HLPPWLACPP IPSPSPSSSS IFQHQDQNPN  300
TAGLLPAVTI SSSHMSATAL LQKAAQMEAT MSITSLHHHR NHHGHVADNV PNTTCTLPGG  360
MFGLDVSTSS SSFNHHDMYD GAFGVGNMGM KNPSSTFRQT PGGRGGGGGG EGMTRDFLGL  420
KPLIQNDIFT LAALGNCMTS NVVSTTTTTT ASTTHNHHQQ ETHKPWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-32168228464Zinc finger protein JACKDAW
5b3h_F4e-32168228464Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401409GGRGGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019458609.11e-144PREDICTED: protein indeterminate-domain 7-like isoform X2
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A4P1R6G11e-141A0A4P1R6G1_LUPAN; Uncharacterized protein
STRINGXP_010501262.11e-139(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-98indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]