PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca44732.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HD-ZIP

Protein Properties

Length: 321aa MW: 36424.1 Da PI: 4.773

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca44732.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.3e-20	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le++Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Dca44732.1 57 KKRRLSVDQVKALEKYFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110 566899***********************************************9 PP
2	HD-ZIP_I/II	126.6	1e-40	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE+ Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+kt+qlE+dy+aLk+++d+lk++ e+L++++++L ++++e Dca44732.1 56 EKKRRLSVDQVKALEKYFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTRQLERDYTALKANFDSLKQNYETLQHDKDSLLRKIEE 148 69*************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-19	37	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	52	112	IPR001356	Homeobox domain
SMART	SM00389	2.8E-19	55	116	IPR001356	Homeobox domain
Pfam	PF00046	5.7E-17	57	110	IPR001356	Homeobox domain
CDD	cd00086	2.26E-17	57	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-19	59	119	IPR009057	Homeodomain-like
PRINTS	PR00031	9.1E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.8E-14	113	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MKRLGSSDSL GALMSLCPVS DEHSPRGNHM YSLEYQSMLD GLEKEGCMEE LGHIPEKKRR 60 LSVDQVKALE KYFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TRQLERDYTA 120 LKANFDSLKQ NYETLQHDKD SLLRKIEELK SKLNGENSEA DICLNGETKM LDSNNNTKGI 180 ELFTTPPSLS EGSDDAKLLN NEKKVADFKD GPSESDSSAI LNEGNNNSPN ASNSSSLQNE 240 QQQLSSSSPS SINCFNFTYW KADGLASVDN HNNNNKDNNN VYHPEFVKLE EHDFFSGEDA 300 CNIFSDEAAP TLHWYSSEQW T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021725422.1	1e-133	homeobox-leucine zipper protein ATHB-16-like
TrEMBL	Q6F6B7	1e-141	Q6F6B7_SILLA; SlHDL1
STRING	XP_010681015.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	5e-61	homeobox protein 16