PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44841.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family YABBY
Protein Properties Length: 242aa    MW: 26592.9 Da    PI: 9.9782
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44841.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY213.57.1e-66201953170
       YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesastsvss 98 
                 +   s+q+Cy+ C+ C+t+lavsvP +slfk vtvrCGhC sll ++l       +a ++l++ ++++      + +++  +++ +  +++ ++t+v++
  Dca44841.1  20 HLLPSDQLCYLPCSRCSTVLAVSVPASSLFKAVTVRCGHCGSLLPLSLPALLFPWSAGNQLNNMTHHNhnlFSSNPHTHMGEMNNQAPNYSFSQTNVAA 118
                 56789**********************************************999999999887665544553333333333333333333322222222 PP

       YABBY  99 ekl.....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +           + e+p++p + rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Dca44841.1 119 SYTtpasnRGGPNVELPKPPSTTRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 195
                 2113332234457899**999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-6323195IPR006780YABBY protein
SuperFamilySSF470954.84E-8138189IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-4143187IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSSSGSPNN ISSLDHQHNH LLPSDQLCYL PCSRCSTVLA VSVPASSLFK AVTVRCGHCG  60
SLLPLSLPAL LFPWSAGNQL NNMTHHNHNL FSSNPHTHMG EMNNQAPNYS FSQTNVAASY  120
TTPASNRGGP NVELPKPPST TRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA  180
AAKNWAHFPH IHFGLMADQA VKRTSNMRPH HPQGVRRGWV DSYGAFISVN TCHFAPFKGH  240
SS
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855930.15e-90axial regulator YABBY 5-like
SwissprotA2X7Q36e-59YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6686e-59YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0K9QY621e-88A0A0K9QY62_SPIOL; Uncharacterized protein
STRINGXP_010676177.16e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-54YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]