PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44848.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 202aa    MW: 22518.1 Da    PI: 10.9517
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44848.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.91.3e-10182202222
                 --SS-EEEEEEE--TT-SS-E CS
        WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                  D y+WrKYGqK++kgs++pr
  Dca44848.1 182 ADDYCWRKYGQKPIKGSPHPR 202
                 69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-14144179IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-9169202IPR003657WRKY domain
PROSITE profilePS5081112.53176202IPR003657WRKY domain
SuperFamilySSF1182901.57E-7179202IPR003657WRKY domain
PfamPF031064.8E-6183202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MQATEVGQTA LIQAHRFLES ISEPNPTQTI QQTSLIAEEA IKGFTKFLAV LEEPTLRTSP  60
SFKRVRKGPI STIRGITARE MVGIIDNPLP RVSMISTPRV HRPMAFNFTS STINDVISQS  120
ILKPILNLGM QSSSGILTFS TENASTKCAS SKTCHCSRKR KRKERRRIKV PAISDKIADI  180
PADDYCWRKY GQKPIKGSPH PR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RKRKRK
2157163RKRKRKE
3157165RKRKRKERR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676251.19e-52PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A0K9RB193e-47A0A0K9RB19_SPIOL; Uncharacterized protein
STRINGXP_010676251.14e-51(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-21WRKY DNA-binding protein 21