PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45041.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 803aa    MW: 93380.2 Da    PI: 8.5053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45041.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-07226245625
                 -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                 C+f+++tG C++G+rC++ H
  Dca45041.1 226 CPFHLKTGACRFGARCSRTH 245
                 ****************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.005220248IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4225245IPR000571Zinc finger, CCCH-type
PRINTSPR018482.6E-11226245IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.6E-11245265IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MAVEDDNDQN NDVQNDELNN NDVMAVCMSR KEKRKLLKKL KRKQLRRQAA INAREIEEAA  60
ANDPETQARL RRLEEEEAER TERDRREWEE RERQFAAALE MKKRREMEEA EEEERRKRDD  120
DAANRDSITN GNEDELNEGD DWEYVEEGPA EIIWKGNEII VKKKKVKVPK KAPDLQLEKQ  180
ECERPISNPL APQSEAFKDY RSAQEVLESV AQQVPNFGTE QDKAHCPFHL KTGACRFGAR  240
CSRTHFYPDK SCTLLFKNMY SGPGLAWEQD EGLETCSRGS VCNFIHCFRN PGGDYEWADW  300
DKPAPRYWQK EMDALFGHKD DGFKDENLSY HSRRSWSRGP GSPHRRTHSD EDNEFNDHRR  360
KYSQKHRGDY EENRSSPRNH RSKRKRSDSV DESDYSSEER KSRHNSNSKR ERCQKLETHR  420
KMNKERQDNA SDKELSERER GKGSLKRKSR TSSWQKNDTV SVHERHSCEK SPHVKKHRLN  480
YHKHDNVDSV KETGKAFSSD IDFAEDGLGI EKNRRRRSEN LHMKDEAYLL DNNSYGSRFG  540
DDVSPKKNRK TIDMSNGKSE YRESSHNSDS LLRADKCHIH NSSSRALDGE RIEAGEKKRH  600
RSRRNSRSEN QAYSVDSESE RLKERSDDRR HRSTKNRRKG KHEVQSSDNG SDRDTLRQHE  660
KKSKGDRRSS RSKNDLDFSD VGLEISQGQG INDTNTKSLS PINKSNDEAT TSESVKACCR  720
NSSSRSVDGE AKVDLEQTYR VAALKKLEEM RRLKDTPLVQ SSVEIHSNEK AAVEDAEGSN  780
EREELSASKE TRKSVASDRR KRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102117KRREMEEAEEEERRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-53C3H family protein