PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45290.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 30681.6 Da    PI: 8.6226
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45290.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.9e-25956148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                krie+ks rqvtfskRr g++KKA E+S LCd +vavi+fss+g+ly 
  Dca45290.1  9 KRIEDKSSRQVTFSKRRSGLFKKAREISALCDLDVAVIVFSSRGRLYQ 56
                79********************************************95 PP
2K-box49.32e-171001861298
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++ ++l+  + k++   e  ++ +Rhl+  dL++Ls+ + + Le++L   l + R++Kn+l+le + +lq+k ++l+ en++L+k++
  Dca45290.1 100 EQRKQLCSGVPKIQTCSELVETVKRHLVSPDLDELSVADFMALEEELSATLLQTRARKNQLMLETVYTLQEKDRNLKLENEELKKEV 186
                 456789999999999999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-26182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.931161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-34160IPR002100Transcription factor, MADS-box
CDDcd002653.31E-31256No hitNo description
PRINTSPR004044.4E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-243859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-14101186IPR002487Transcription factor, K-box
PROSITE profilePS5129710.029102195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRRKIEMKR IEDKSSRQVT FSKRRSGLFK KAREISALCD LDVAVIVFSS RGRLYQSSFS  60
SSSSSPSSSL SQVLERYEDS INLDKKASTN AKESVTEVIE QRKQLCSGVP KIQTCSELVE  120
TVKRHLVSPD LDELSVADFM ALEEELSATL LQTRARKNQL MLETVYTLQE KDRNLKLENE  180
ELKKEVRKVK DCNNSGTKFD RNNNWKELGA ANIHNHEGPL RLESIPHDNG NNMESTDNHN  240
NENQVGFKFI NLVNTPAERP LPRTTLALLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16177169MEF2C
5f28_B2e-16177169MEF2C
5f28_C2e-16177169MEF2C
5f28_D2e-16177169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723078.13e-64agamous-like MADS-box protein AGL27
RefseqXP_021745286.12e-64agamous-like MADS-box protein AGL27
TrEMBLA2CHJ83e-58A2CHJ8_BETVM; FLC-like 1 splice variant 1
STRINGXP_010682731.18e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-35AGAMOUS-like 8