PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45295.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 437aa    MW: 48050.2 Da    PI: 7.823
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45295.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.79.3e-40176253178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC+ dls+ak+yhr+h+vCe hsk+p v+++g+e+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+++
  Dca45295.1 176 RCQVEGCSIDLSSAKDYHRKHRVCESHSKCPRVVINGHERRFCQQCSRFHSLGEFDQRKRSCRRRLSDHNARRRKPKP 253
                 6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-32172238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.53174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-38175257IPR004333Transcription factor, SBP-box
PfamPF031103.4E-30177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSAVSIMELN AKSPFMWELE NLVMFNPKDG ETPKTLQLVE SEIEGIEGFE VGSFYSSGGP  60
SDGGTGSDLG YASSSRSSKS ASDYSSTERE IKETKFSLEG KDSFQQDLGR KSEPTIESSG  120
ASGESLTALE LCNRTYFEDT GKANNTKNRL FVPTSDLSDC SGKKSRSSCL STEIPRCQVE  180
GCSIDLSSAK DYHRKHRVCE SHSKCPRVVI NGHERRFCQQ CSRFHSLGEF DQRKRSCRRR  240
LSDHNARRRK PKPEVFQFNS MRLPSSVYEG RNQLNFGQAP VLHNRQGQAM WDCRSASKHT  300
PPKSGLTASL QAGGGASFNG FHSTHGGFQT HFLSPKGTPP EVCHRGVSAS VTQSNIEAAP  360
NQGALSLLST TTTTGCSQLD HQTMQSNNPA MQAMHSTAPP VSSDFWISEQ QPCNGPEPNT  420
WSFQLFKAPN ESGFYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-25171250584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249RKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682751.11e-173PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682752.11e-173PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682753.11e-173PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682754.11e-173PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682755.11e-173PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A0K9QHU31e-150A0A0K9QHU3_SPIOL; Uncharacterized protein
STRINGXP_010682751.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-63squamosa promoter binding protein-like 2