PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45418.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 260aa    MW: 29696.6 Da    PI: 8.0893
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45418.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.31.4e-0931112789
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 A+ +GF+++ks++k++   g+   +  +C + gk +   k+  ++ +r+++++++++C  k+k+   +d+k+ v+ +   HnHe+
  Dca45418.1  31 AHGLGFRLCKSSNKHR---GTREYHLIKCERGGKYNGPFKDpfKVPKRKKTTSKKIECPFKIKIVSGTDEKFAVMPMYGFHNHEM 112
                 8899*******99998...55568889*******99998888999**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-631112IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSTTGDDEFN DGDYEGDDQS DLGDDNISAI AHGLGFRLCK SSNKHRGTRE YHLIKCERGG  60
KYNGPFKDPF KVPKRKKTTS KKIECPFKIK IVSGTDEKFA VMPMYGFHNH EMGKYFDGHH  120
QMTSFSDEQK DYVRVNVVSE IKTANIRLGF KENYPDQPQP NKRQFDSVVA KVRLEEMGGR  180
SHVQQIIHLA ELNGYLYFYD IDGHDDTLSR VFMVHPMALK LFKAYYYVIG IDSTYKTNAY  240
KYAVVDIVGV TPVGKSFLIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-