PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca45434.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 195aa MW: 21997.2 Da PI: 7.4436

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca45434.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.3	1e-12	70	160	1	80
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fY +YA+ +GF r ++ k ++g i+++ vC++eg+++++k+ + e ++++ tr+gCkak+k + + d+ ++v Dca45434.1 70 EFYYSYASACGFVPRLETAKMF-HDGVIYTKLIVCNREGFKSSKKNVsltgfnqkeeissKPYEPKKTKITRIGCKAKIKFQFK-DHFYVVVV 160 6************9998887.9999***********9998899998887766777899**********9988.66776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	70	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSEADVVLCS TGSTSVPYTP VVQQPVIVDK EYKLLLNITP GGSEDWRKIV SSDSKPYIGQ 60 AFPTLEEGIE FYYSYASACG FVPRLETAKM FHDGVIYTKL IVCNREGFKS SKKNVSLTGF 120 NQKEEISSKP YEPKKTKITR IGCKAKIKFQ FKDHFYVVVV FHXXXRKYHF NTNEVSELES 180 TTTEAASDSD PASEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-09	FAR1 family protein