PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca45627.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 353aa MW: 37760 Da PI: 4.487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca45627.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	169	190	33	54
.TTS-STCHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksL 54 ++++K +K+++Le A+eY+ksL Dca45627.1 169 NTHTKTDKSSMLEDAIEYLKSL 190 5799****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.93E-4	145	195	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-6	170	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-7	171	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MELLWQNIAP VAVNPSSNSM NSFSISGVTV PPSPPPLSLS ALASNNQFYM AEDQMASWLH 60 NPNSLVLPSL MVAASCPMGS MVVTSSTPMP ISTVRESLET EEVGQEESNT STSSCSANNN 120 NLATIAATVT NDAEKCVTTA IREMVDRKTK SREVEESLAT PTATNRAINT HTKTDKSSML 180 EDAIEYLKSL KMQAQTLSMG YGMLIQGIQQ PYMPPPMGMG MYMGLGMDLG MTRPLVPYAP 240 MTPPPPSLPS PPATNIVSPL ASRTAVIPYA VPLVLSAQHS VDQTSIPANS SGSSYVVPTP 300 EMTPNMVSSC QQYLTYMQMQ MQMQAAQMFS QPGSSKPDAI KSVGDNSNND DTK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MELLWQNIAP VAVNPSSNSM NSFSISGVTV PPSPPPLSLS ALASNNQFYM AEDQMASWLH  60
NPNSLVLPSL MVAASCPMGS MVVTSSTPMP ISTVRESLET EEVGQEESNT STSSCSANNN  120
NLATIAATVT NDAEKCVTTA IREMVDRKTK SREVEESLAT PTATNRAINT HTKTDKSSML  180
EDAIEYLKSL KMQAQTLSMG YGMLIQGIQQ PYMPPPMGMG MYMGLGMDLG MTRPLVPYAP  240
MTPPPPSLPS PPATNIVSPL ASRTAVIPYA VPLVLSAQHS VDQTSIPANS SGSSYVVPTP  300
EMTPNMVSSC QQYLTYMQMQ MQMQAAQMFS QPGSSKPDAI KSVGDNSNND DTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	5e-07	bHLH family protein