PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45765.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 443aa    MW: 49529.4 Da    PI: 9.9044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45765.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05212234223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C++Cg++F  ++nL+ H+ + H
  Dca45765.1 212 SCTHCGEVFMKPDNLELHLAVrH 234
                 8*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6211239IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-18236441No hitNo description
Gene3DG3DSA:3.90.228.101.2E-8239440IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAKNTSTKPT KEIHKTRKGK QQQQQQQQLP SWAVMRNILT CKHLEVEPPL QQQQQPSPQN  60
KKHKQKTTTT TTTTTTTTTP PPPKSKKMRC SGSLCNNTKV MHRPEQQNQQ QQQQQQSPSP  120
ETRKVKNTPT STPSSSSHEG SNRSFNTTPI SSSLTTEIKG NNHNNNNNNS SNNYSVKGMP  180
FRRLTGCYEC RMIVDPVLSF TRDPSLRSTI CSCTHCGEVF MKPDNLELHL AVRHAVSELG  240
PDDTSKNIVE IIFQSSWLMK QIPVCKIDRI LKVHNTQRTI NKFEEYRDLI KFKATNLPKK  300
HPRCIADGNE LLRFYCTTFK CSLGLNGSSN LCNSIPHCNI CSIIKNGFKS LGGPTHEKGI  360
LTTASSGRAH EQAKVGPDGV ERRAMLVCRV IAGRVRKTPA EGPSEECDSM AGETTGVYSN  420
LDELYVFNPR AILPCFVVIY GGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764PQNKKHKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692561.10.0PREDICTED: uncharacterized protein LOC104905404
TrEMBLA0A0K9QQH80.0A0A0K9QQH8_SPIOL; Uncharacterized protein
STRINGXP_010692561.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-94C2H2-like zinc finger protein