PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45873.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 241aa    MW: 27097.6 Da    PI: 6.8495
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45873.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.14e-20107194290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y+++A  +GFs rks+++  k + +++++ + Cs+eg+r+e++   ek++r+ +etrt+C+ak+ vk++++g +ev    l HnH+l+
  Dca45873.1 107 LYSQHADAIGFSARKSTQRLAKGSLTVKEKYYACSNEGTRSESSLG-EKKKRKVPETRTHCNAKIIVKLTEEGLYEVVAHTLIHNHPLT 194
                 7******************************************999.99**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-16107194IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEVSCIQQIH DSQSNVTYIQ NYPTIAVSCS QQVQSIVTSL QPDSIVEVPS NQHIHDLQSN  60
IQQQELASEL QIQATEEVVD PIIEGQIDVS GSLVGRKSKD LDELFELYSQ HADAIGFSAR  120
KSTQRLAKGS LTVKEKYYAC SNEGTRSESS LGEKKKRKVP ETRTHCNAKI IVKLTEEGLY  180
EVVAHTLIHN HPLTRMRWQH LHKSGRKMSN YKADVIVEMY NSGMSNYKAC GIDFVFLSQV  240
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.16e-08FAR1-related sequence 6