PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46065.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 378aa    MW: 43153.6 Da    PI: 6.5062
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46065.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.22e-1670165291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  Yn++A+ +GF +rk + + +k+ +  ++r fvCs++g +++ +          + ++ ++ + tr++Ck +++ + +++g we+ + +l+HnH+l+p
  Dca46065.1  70 VYNRHARATGFGTRKGTRRLEKNVE--YERYFVCSCQGVHANGRALnsdgtpslSGTQTKRVNITRCDCKPSIRTQVNSEGLWEILNHNLDHNHSLTP 165
                 6***************999986655..99**********9998776899999998888888999*******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1470165IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.421330366IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MINDNDDTIL APHEDDIIGL SVDKGTNHVK DDLGSIILDD GSIHSLKEDF DYTGSLVGLK  60
ARKWEYLLTV YNRHARATGF GTRKGTRRLE KNVEYERYFV CSCQGVHANG RALNSDGTPS  120
LSGTQTKRVN ITRCDCKPSI RTQVNSEGLW EILNHNLDHN HSLTPPQWQH NHRSERKITA  180
EEGEVIEMMT EALVRPSVQY RVLAVMSGGE ELVGHTKRDH INYVNRLKMR AIEGGDASTL  240
VELLTKCQSE DPGFFYRLKF GDDGKLCHVF WRDSMMKEDY LLYHDVLIFD TTAFEKEFSI  300
AIGTRAIECT TEGHIKSYLV YPSGSDENPH HVTFDSSNLL IECTCRKFQE SGMLCFHSIR  360
ILYLRSVSEI PDRYISRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-24FAR1-related sequence 5