PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46157.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 265aa    MW: 30981 Da    PI: 9.9427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46157.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.44e-0770160990
        FAR1   9 evGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkle.......leHnHela 90 
                 + GF ++k+++ ++ +r+ e   + f+Cs++g+++   +  e+ +++ ++++++C+ +++  +++    +++ ++   +         HnH+l+
  Dca46157.1  70 DNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-ENPKKKLKTQKCDCRFRIRAVQNYhfinNKRVVLC--NivtletfGYHNHALT 160
                 6799999888755449999*************99998777.55566666666666666654444345422222222..2335556667888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
IYVPRMDERP GLGPSYGRTS RLRSLLWTNV QDSFENLGGD NVDYNYLFVT EVCFEDRDKA  60
FDWANEIVRD NGFVLVKANN GSKNRRQPEL LASYFRCSRY GRSKGVYDPE NPKKKLKTQK  120
CDCRFRIRAV QNYHFINNKR VVLCNIVTLE TFGYHNHALT KYKNGHRGYA GLDEDEKAFV  180
RKEYSSAVLP RDIKTGLHQK SPDKPQPSSK QIYNVTSKIR RELKGDQNPV QQMLALAVEA  240
NYVHWHETNP ECRRRRSVTT WFFVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117PKKKLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-