PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46228.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 1061aa    MW: 118182 Da    PI: 6.5397
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46228.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23126227199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d++++ W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   ++++ +l+
  Dca46228.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPCQ-ELVAKDLHNQAWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFI--RDEKSQLL 221
                 99*****************************98888885.9************************************************..45677789 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  Dca46228.1 222 LGIRRA 227
                 999997 PP
2Auxin_resp121.37.4e-40252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdld vrW+nS+Wr+L+
  Dca46228.1 252 AAHAAANNSPFTIFYNPRASPAEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDAVRWKNSQWRNLQ 334
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-44115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-42117241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-20125226No hitNo description
PfamPF023622.2E-21126227IPR003340B3 DNA binding domain
SMARTSM010194.9E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266126228IPR003340B3 DNA binding domain
PfamPF065073.4E-35252334IPR010525Auxin response factor
PfamPF023092.6E-89321020IPR033389AUX/IAA domain
PROSITE profilePS5174523.9379341027IPR000270PB1 domain
SuperFamilySSF542775.49E-79491012No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MKAPTNGFMA NSTEEGSRVI NSELWHACAG PLIAVPPIGS LVVYFPQGHS EQVAASMQKE  60
TDSIPSYPNL PAKLICMLQN VSLHADPETD EVYAQMTLQP VNKYDRDALL ASEMALKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPCQELVAKD LHNQAWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALASSVIS  240
SDSMHIGIFA AAAHAAANNS PFTIFYNPRA SPAEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEECGVRRY MGTITGISDL DAVRWKNSQW RNLQVGWDES TAGERPSRVS LWEIEPVVTP  360
FYICPPPFFR PKFSNQPGLP DAETDIESMI KRGMPWLGDD FGMKDVPNSI FPGLSLVQWM  420
NMQQNNQFPG AQPGLFPSMV SASTLQGGIA ADDPAKLLNF QSPSLSMPGL QFKKTLQPNQ  480
LGQLNQQPAN WSQQQLQQQL QNALNSQQQQ QQQQQQQQQQ QQQQIQQHQH FQQQQQHQFQ  540
QKQQQLQNNP LNSQNQQNER QQLPNQQPVI PQQQQIPPQS SFVNSGLVSS NHNLNQNMAQ  600
SSVYSQLQRQ QLVGGHNQAP QNVSLNKDST FLLTSPDVQF PQQRPPVLQT LPDHPLQPQT  660
PTKLLQQQQQ PQPHQQPHHL ISPVSSQVQP QISSQQCASQ ENRVSQERPL SQHQPHASVN  720
TQIPAVQLQG MRRPTTVRSQ SVPTDGDAPS CSTSPSTNNC QIPPSNFLTR NHPTLDSGNL  780
MQNLQERSDI RIKHEIPSSK VVEPLEASSS VTSYGLDASG LQQNLTLPTF GLDGDIQSHP  840
RNSSLPLLTP MDGLIPDTLL SRGFESGKEL HNLLSDYNGA PRDIETELSA AALSSQTFGV  900
PDMTFKSGCS NDVAMNDPAV LGGGIWPSQT QRMRTYTKVQ KRGSVGRSID VTRYKGYDEL  960
RCDLARMFGI EQMFEDPQRS DWNFVYVDHE NDILLVGDDP WDEFVSCVQS IKILSSAEVH  1020
QMSLDGNLGN GTIPNQESSG TDSGNAWGAH YGDNSAASFN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661435543388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9R8I50.0A0A0K9R8I5_SPIOL; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19