PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46399.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 361aa    MW: 39812 Da    PI: 6.6101
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46399.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box284.6e-09941436
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                + C+ +++ +++lfC+ ++ +lC +C + +H+ 
  Dca46399.1  9 KQCDSCKSSPATLFCRADSAFLCSSCDSLIHSA 41
                68*****************************64 PP
2zf-B_box20.97.5e-075395541
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 C+ +e+ +++  C+ +  +lC +C   +H+       H++ p
  Dca46399.1 53 LCDVCEHSPATVSCKADAAHLCSSCDRDIHSAnplsrrHDRLP 95
                6*****************************6678888898876 PP
3CCT70.34.9e-24294337144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Dca46399.1 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-14653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424653IPR000315B-box-type zinc finger
PfamPF006432.8E-7948IPR000315B-box-type zinc finger
CDDcd000216.68E-91153No hitNo description
PROSITE profilePS5011910.2674996IPR000315B-box-type zinc finger
CDDcd000219.48E-75296No hitNo description
PfamPF006433.3E-55396IPR000315B-box-type zinc finger
SMARTSM003365.0E-65496IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787294336IPR010402CCT domain
PfamPF062035.5E-18294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGVGLMASKQ CDSCKSSPAT LFCRADSAFL CSSCDSLIHS ANKLASRHPR FFLCDVCEHS  60
PATVSCKADA AHLCSSCDRD IHSANPLSRR HDRLPLSPFF NHHDDNVNDD ADAPPPPPPP  120
TATAAAISKL FGDDYYSDSD EAEAASWLLS NTKHSEDEPK SIDYLFGDTD THVGSFMDMI  180
DPPKPDPGVD CVVPDPDPDP TNNNNNPPEP HSMYSLSSYN HNFNNNANTY ETHHHHHHPL  240
KHHYHPVSSF APANQPSLSH SVSSSSLEFG VVPDANAMAD VGSKQHIKMM GLDREARVLR  300
YREKRKNRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVD PAASVDGLFS SDPGYGVVPS  360
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850426.11e-136zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0K9RUG61e-134A0A0K9RUG6_SPIOL; Uncharacterized protein
STRINGXP_010692981.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.24e-46CONSTANS-like 3