PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca46464.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 437aa MW: 50542.7 Da PI: 9.8444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca46464.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.2	5.2e-08	3	37	57	91
FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +tr Cka+++ k ++dg we+++ l+HnH+l+p Dca46464.1 3 TTRSRCKARIRTKINDDGLWEIMDHILDHNHPLTP 37 7999****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-5	2	37	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.582	257	293	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSTTRSRCKA RIRTKINDDG LWEIMDHILD HNHPLTPPQW QHHHRSERRI TTEEGEVIQI 60 MTEAMVPPSV QYRIATATAG DEKTESFEWL FNAFNESMGR DVIPVSIFTD QDLAMSIAID 120 KIRRQSRRNI PEKGLGYDFT VPLRGTVKSY PKPFSGKKKI ILERICRFIP IQNTDTVKRW 180 RSQEEHNEFN CIRSKATSVY PMVDLLDHAA QVYTLSLFRI FEKEFGLAMG TRVVDCVSDG 240 SISSYIVYSS GGTEIPHHVT FDSTNSHVEC TCRKFQEMGL LCYHSIRILH LRSVSEIPDC 300 YILKRWTKFA KKDVWDRLLP NDTRKAGIND AINWRRDTLT NFHNLITKCQ NLPEARAILD 360 KAFATTNQEV VSFFNRMEVE HRSSALLDTS TPIQDPQRSK TKGRNQRKRS SLTKRKRKGP 420 KERVAEASSY TPIPRLL

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSTTRSRCKA RIRTKINDDG LWEIMDHILD HNHPLTPPQW QHHHRSERRI TTEEGEVIQI  60
MTEAMVPPSV QYRIATATAG DEKTESFEWL FNAFNESMGR DVIPVSIFTD QDLAMSIAID  120
KIRRQSRRNI PEKGLGYDFT VPLRGTVKSY PKPFSGKKKI ILERICRFIP IQNTDTVKRW  180
RSQEEHNEFN CIRSKATSVY PMVDLLDHAA QVYTLSLFRI FEKEFGLAMG TRVVDCVSDG  240
SISSYIVYSS GGTEIPHHVT FDSTNSHVEC TCRKFQEMGL LCYHSIRILH LRSVSEIPDC  300
YILKRWTKFA KKDVWDRLLP NDTRKAGIND AINWRRDTLT NFHNLITKCQ NLPEARAILD  360
KAFATTNQEV VSFFNRMEVE HRSSALLDTS TPIQDPQRSK TKGRNQRKRS SLTKRKRKGP  420
KERVAEASSY TPIPRLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-13	FAR1-related sequence 7