PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca46507.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 635aa MW: 73327 Da PI: 8.1056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca46507.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.7e-15	45	131	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY+ YA +GF+vr+ ++kk r+g+++++ +vC++eg+ +++kk +ek++r+++ +r+gCka++ + k+ + v+ + Dca46507.1 45 QFYKIYALACGFDVRRYTTKKW-RDGTVKTKLLVCNREGFWKPKKKLegndvdAEKQERRKKIHRVGCKARMSLADFKNFHTAVKCFI 131 6**************99887.8888************9998999999999999************988777666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-11	45	122	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-29	186	278	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MYKIKLEEEG EVNQGLEEGQ FCRSVEDSFT PFVGKQFESI EEAIQFYKIY ALACGFDVRR 60 YTTKKWRDGT VKTKLLVCNR EGFWKPKKKL EGNDVDAEKQ ERRKKIHRVG CKARMSLADF 120 KNFHTAVKCF IHERDGQLFV DHFKSMKETR AGFYFDYDID EDGSLRRAIW ADGYARKNYG 180 VFGDAVAFDP TYSTNRYSMV FTPFTGVDNH RKSVTFAGAL IAKEDYESFN WVFSRFLHAM 240 DGKEPEYIIT DQDPGIIKSV NSVFKKALHR FCMWHIMNKV PTKFGANKAD YQIFLKKLNA 300 IIWDANIEPE EFDMRWVETM EEHGVGVGDW FEEAFAIRKQ WVIVHCKDLK MGGIMRMTQR 360 SESENSFFKK FEHKHGTLVE FWMRFESAMD QQRHNYKKLD NESSQSSAKL IGSTELEKHG 420 VTVFTDVIFK EFQKELMSSM TTCRCVGFRV EDGYEISSVK DAERDLVVER RNLQPVAAVC 480 SIVGVLCVVM SFGFMLGSDG KPIEDDQLEL STLWAEFHQT VSVVRAHGKN SVESLCKLVK 540 EFRLGLSNNC ENLSKDKEME QLLGCKVSTE ISVLPPKQSK NKGTAKRLTS MKSKAVEVAK 600 KPKRMCKNCK QMANHDKRNC PNPYVESLEL VEELN

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MYKIKLEEEG EVNQGLEEGQ FCRSVEDSFT PFVGKQFESI EEAIQFYKIY ALACGFDVRR  60
YTTKKWRDGT VKTKLLVCNR EGFWKPKKKL EGNDVDAEKQ ERRKKIHRVG CKARMSLADF  120
KNFHTAVKCF IHERDGQLFV DHFKSMKETR AGFYFDYDID EDGSLRRAIW ADGYARKNYG  180
VFGDAVAFDP TYSTNRYSMV FTPFTGVDNH RKSVTFAGAL IAKEDYESFN WVFSRFLHAM  240
DGKEPEYIIT DQDPGIIKSV NSVFKKALHR FCMWHIMNKV PTKFGANKAD YQIFLKKLNA  300
IIWDANIEPE EFDMRWVETM EEHGVGVGDW FEEAFAIRKQ WVIVHCKDLK MGGIMRMTQR  360
SESENSFFKK FEHKHGTLVE FWMRFESAMD QQRHNYKKLD NESSQSSAKL IGSTELEKHG  420
VTVFTDVIFK EFQKELMSSM TTCRCVGFRV EDGYEISSVK DAERDLVVER RNLQPVAAVC  480
SIVGVLCVVM SFGFMLGSDG KPIEDDQLEL STLWAEFHQT VSVVRAHGKN SVESLCKLVK  540
EFRLGLSNNC ENLSKDKEME QLLGCKVSTE ISVLPPKQSK NKGTAKRLTS MKSKAVEVAK  600
KPKRMCKNCK QMANHDKRNC PNPYVESLEL VEELN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	104	KKKLEGNDVDAEKQERRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-52	FAR1 family protein