PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46559.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 390aa    MW: 43622 Da    PI: 6.5952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46559.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33198256159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s+fprsYYrCt+ gC vkk+vers +dp++v++tYeg+H+h+
  Dca46559.1 198 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTVGCVVKKRVERSCDDPSTVVTTYEGNHTHP 256
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-34183258IPR003657WRKY domain
SuperFamilySSF1182905.49E-29191258IPR003657WRKY domain
PROSITE profilePS5081132.214193258IPR003657WRKY domain
SMARTSM007742.6E-38198257IPR003657WRKY domain
PfamPF031065.8E-26199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSNINNNNKI MMNKSIFQVA LQEEIMNGVS DFDALLGFSS DYLPPSLSPP RDHYYNYNYN  60
HFTNNYNYNY NNDDDHNNNN NNNNYCCDHR LRKQVTVDPC LTGESSEVVN TPTPTTPNSV  120
SVSSSSEDVE NRLRKNKELQ SKIGDGDGDG DEDAAAADES NLVEQDKSKK QLKPEKKNQK  180
RPKEPRVAFK TKSEVDHLDD GYRWRKYGQK AVKNSPFPRS YYRCTTVGCV VKKRVERSCD  240
DPSTVVTTYE GNHTHPCPVM ARGGLGFGMS SLIIPNPGPL DQCSTGPTLP VSFGVTGAAL  300
SQSLFFQPSP ESFLHRHLYQ QKPSQFPSYF QNNSISSSIN FTTSIGGATN SNTTSMMADN  360
NRQFPPQVRV DGLLQDVVTS QILNDYQQST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28188259778Probable WRKY transcription factor 4
2lex_A4e-28188259778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774274.11e-73probable WRKY transcription factor 23
TrEMBLA0A0K9QEI83e-58A0A0K9QEI8_SPIOL; Uncharacterized protein
STRINGXP_010671761.12e-60(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-42WRKY DNA-binding protein 48