PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46602.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 254aa    MW: 28825.3 Da    PI: 9.5637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46602.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1384135155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rr+h ++Er+RR+++N+ ++ Lr+l+P++   +s + + a+++  A++++k+L+
  Dca46602.1  84 QRRTHIAVERNRRKQMNEHLAVLRSLMPES---YSLRGDQASVVGGAIDFVKELE 135
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-1282139No hitNo description
Gene3DG3DSA:4.10.280.108.7E-1482139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1583152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1184135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-989140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVFETMLNYN DIFNYMVCDT LNNAAAYYHG CSNTDVFDVG SLPLLQQGQF PSKGGVCVGV  60
QGKKKKKRRR RPKVCKNKEE AESQRRTHIA VERNRRKQMN EHLAVLRSLM PESYSLRGDQ  120
ASVVGGAIDF VKELEHLVHS LEAQKLLVLQ REEVIRVGTH DAHTTPPNPD VLLNPQHLVT  180
EHCNKYTLKS RTEVAEVEVT LIETHANLRI LSKKNPRQLS KLISGFQSLR LTILHLNVTS  240
LDPFVLYSIS IKVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270KKKKKRRRR
26368KKKKRR
36469KKKRRR
46470KKKRRRR
56570KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852436.12e-91transcription factor bHLH71-like
SwissprotQ9C7T42e-56BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9R2H71e-89A0A0K9R2H7_SPIOL; Uncharacterized protein
STRINGXP_010695562.11e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]