PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46628.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 323aa    MW: 37430.3 Da    PI: 6.9926
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46628.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.51.4e-25197287191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                 ++Yn+YA++ GF +rk++ + sk++g  t+r+f C keg+r  +k++   ++  raetrtgC+a+l++++++  gk++v++++ eHnH+l+p
  Dca46628.1 197 NYYNDYARRKGFGIRKEYRNISKKDGVLTSRRFSCHKEGERPLDKRD-CLTKDARAETRTGCQAHLTISLDRkVGKYKVADFVAEHNHPLQP 287
                 69*****************************************9999.9999******************9989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541603.36E-641122IPR016197Chromo domain-like
PfamPF003854.0E-880127IPR023780Chromo domain
PfamPF031013.0E-22197287IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRGVMRFGKR GKLSPKYIGP YEILERVGEV AYRLALPPAL TRVHDVFHVS QLRKYLSDPS  60
HVLEPEVIEL DESLTYEERP VAILDSKVRK TRRGETKIVK VLWSNHDTEE ATWEAEEAMK  120
HKYPHLLTQT TCRMFELGGV AGRDQYTNQK METLVSEDVI NWINIIHEQS TTQGNEIIVD  180
DSPQLEMQFE NEDHAYNYYN DYARRKGFGI RKEYRNISKK DGVLTSRRFS CHKEGERPLD  240
KRDCLTKDAR AETRTGCQAH LTISLDRKVG KYKVADFVAE HNHPLQPPNY VHMIRSQRKI  300
TETQATEIEA ANDCGLSVYE CDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6NMW13e-61A0A2Z6NMW1_TRISU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-23FAR1-related sequence 5