PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46738.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25142 Da    PI: 4.233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46738.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.11.7e-1120561550
                HHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE CS
      SRF-TF 15 kRrngilKKAeELSvLCdaevaviif.sstgklyeys 50
                 R+++i+KKA+ LS+LC++++++i + s +++  ++s
  Dca46738.1 20 LRKATIFKKAKQLSTLCGVDASLIFYdSGEQTPETWS 56
                4***********************9834455556666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.732158IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-4157IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-111974IPR002100Transcription factor, MADS-box
PfamPF003191.6E-82151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKRSTEIEER IKREKLNKTL RKATIFKKAK QLSTLCGVDA SLIFYDSGEQ TPETWSSRPD  60
GVSVINKYLS LTDQPQIAHP RIQPSDIVDE ECCAVRDREF INNLGFEELN GFASLLAGKI  120
ENLNQRINAL REAEWFENIT SDDHLLREPP SDLPSPSVLG NVDFTFDGLE SFTLDDLQFG  180
TTSTTDQVNV ESPSRSPLVY DSLANLEFVD DDFDWMKEVI TS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.12e-08AGAMOUS-like 90