PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca46740.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 362aa MW: 41343.9 Da PI: 9.733

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca46740.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.6	4e-08	20	101	7	89
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 A+ +GF ++ks++k + g+ + +C + gk + ++ ++ +r+++++++++C k+k+ +dg++ v+ + HnHe+ Dca46740.1 20 AHGLGFGLCKSSNKPR---GTREYHLIKCERGGKYKGPFTDplKVPKRKKTTSKKIECPFKIKIVSGTDGTFAVMPMYGFHNHEM 101 8899****998877...555688899**99988888899************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-5	20	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-27	246	339	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MNTLCFENMI IAYTWAQAIA HGLGFGLCKS SNKPRGTREY HLIKCERGGK YKGPFTDPLK 60 VPKRKKTTSK KIECPFKIKI VSGTDGTFAV MPMYGFHNHE MGKFFYGHRQ MTSFSDEQID 120 YVRVHVVSEV KTANIRLGFK EKYPDQTQPN KRQFDSVVAK VRLEEMGGRT HVQQMIHLAD 180 LNRYLYFYDV EGEDETLSRV FMVHPVALKL FKTYYYVIGV TPGVVRAWRA TVNDISAFSW 240 GRGVTIGIDS TYKTNAYEYA VVEIVGVTPV GKSFLIAWAM ISNEKTESYV WLLEMLRQVL 300 SPNVSPTAFV TDRELSLMAA LSIVFPSVPH LLCVWHINTA VENKAKKVFL DGNRGQRFVD 360 WK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MNTLCFENMI IAYTWAQAIA HGLGFGLCKS SNKPRGTREY HLIKCERGGK YKGPFTDPLK  60
VPKRKKTTSK KIECPFKIKI VSGTDGTFAV MPMYGFHNHE MGKFFYGHRQ MTSFSDEQID  120
YVRVHVVSEV KTANIRLGFK EKYPDQTQPN KRQFDSVVAK VRLEEMGGRT HVQQMIHLAD  180
LNRYLYFYDV EGEDETLSRV FMVHPVALKL FKTYYYVIGV TPGVVRAWRA TVNDISAFSW  240
GRGVTIGIDS TYKTNAYEYA VVEIVGVTPV GKSFLIAWAM ISNEKTESYV WLLEMLRQVL  300
SPNVSPTAFV TDRELSLMAA LSIVFPSVPH LLCVWHINTA VENKAKKVFL DGNRGQRFVD  360
WK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-15	FAR1-related sequence 5