PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4707.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 636aa MW: 72040.2 Da PI: 5.772

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4707.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.3	4.3e-21	33	122	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 fk++ ++ + l +p f+++ +++ ++++ l+d+sg++W+v l +k+g++++++GW++Fv+++g++ gD vvF++ ++s+f +v vf + Dca4707.1 33 FKIM--FGNNFDNYLQVPPAFVKKVKSE--IGRKVFLQDSSGQQWDVSL--INKRGSFFFKTGWRNFVQDHGIQMGDLVVFYYCKDSDF--LVEVFGR 122 5555..33344466999***999755..7889***********..9999*************************99*..9999987 PP
2	B3	47.6	3e-15	548	634	14	98
T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + lvlp + + +++ + l+d+sgr W + + +ksg vlt+GWkeF kan+++ gD ++F++++++e+ l+v v+ Dca4707.1 548 NFLVLPGPLPLTVrvdrRRTRPKQLLVLLKDSSGRIWPLIY--HNKSGFKVLTSGWKEFMKANNIQPGDECIFTVENSEEALLNVEVVP 634 5555555553333445533344667899***********..*****************************887788878888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.6E-25	30	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.199	30	123	IPR003340	B3 DNA binding domain
CDD	cd10017	1.29E-19	32	120	No hit	No description
SuperFamily	SSF101936	2.94E-23	32	125	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-18	32	122	IPR003340	B3 DNA binding domain
SMART	SM01019	7.0E-16	32	123	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.9E-13	543	634	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0068	549	636	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.55E-13	567	628	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-12	569	626	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.58E-10	574	619	No hit	No description
PROSITE profile	PS50863	12.21	574	636	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MCPAAAACSS CLRNCSVMHK RKHGEPALGS AFFKIMFGNN FDNYLQVPPA FVKKVKSEIG 60 RKVFLQDSSG QQWDVSLINK RGSFFFKTGW RNFVQDHGIQ MGDLVVFYYC KDSDFLVEVF 120 GRSGCLQRYD NLDDAVADEA ARSSVPLKRS RDLPFEQSSR KKRFLSSDAA ADEAARSSVP 180 LKRSRDLPFE QSSRKKRFLS RDVSDSEHDV VRRPRNVAFV EEPVVVARKA PTESQAREWS 240 RKNVEEPVIM ARKPRTEWQA RERSSMVEPS FTSHRDKNRP EVVPETVVEP CFTASRDQNR 300 RKVLPEVEIL ADPCFIPTRD KNVVSEHGRE CLFDLSAFEM PSHKSTTMDV GEETEARLDL 360 STYELPQIET CGVKTMESNQ VLSVIAEDVP TMDRDDNTDG FLPDMSFFNF PEYECAIVGD 420 KGDLQEKQHG QESDKCQNTA IEDASDNLMN RNISEKANEE LSSEPREAEL RRRDDAPITS 480 KSPTVDLPTD PIAQANSSRE KSLSGEINSM VKIEADVHPF VKHEPVDYDV PSENGVKMTC 540 PVPRGTENFL VLPGPLPLTV RVDRRRTRPK QLLVLLKDSS GRIWPLIYHN KSGFKVLTSG 600 WKEFMKANNI QPGDECIFTV ENSEEALLNV EVVPRN

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MCPAAAACSS CLRNCSVMHK RKHGEPALGS AFFKIMFGNN FDNYLQVPPA FVKKVKSEIG  60
RKVFLQDSSG QQWDVSLINK RGSFFFKTGW RNFVQDHGIQ MGDLVVFYYC KDSDFLVEVF  120
GRSGCLQRYD NLDDAVADEA ARSSVPLKRS RDLPFEQSSR KKRFLSSDAA ADEAARSSVP  180
LKRSRDLPFE QSSRKKRFLS RDVSDSEHDV VRRPRNVAFV EEPVVVARKA PTESQAREWS  240
RKNVEEPVIM ARKPRTEWQA RERSSMVEPS FTSHRDKNRP EVVPETVVEP CFTASRDQNR  300
RKVLPEVEIL ADPCFIPTRD KNVVSEHGRE CLFDLSAFEM PSHKSTTMDV GEETEARLDL  360
STYELPQIET CGVKTMESNQ VLSVIAEDVP TMDRDDNTDG FLPDMSFFNF PEYECAIVGD  420
KGDLQEKQHG QESDKCQNTA IEDASDNLMN RNISEKANEE LSSEPREAEL RRRDDAPITS  480
KSPTVDLPTD PIAQANSSRE KSLSGEINSM VKIEADVHPF VKHEPVDYDV PSENGVKMTC  540
PVPRGTENFL VLPGPLPLTV RVDRRRTRPK QLLVLLKDSS GRIWPLIYHN KSGFKVLTSG  600
WKEFMKANNI QPGDECIFTV ENSEEALLNV EVVPRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	5e-14	B3 family protein