PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47145.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 302aa MW: 35002.4 Da PI: 5.1357

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47145.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.7	3.6e-47	11	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 pGfrF+Pt+eelv++yLk+ v +k++++ ++i ++iy+++PwdLp ++ +e+ewyfF++rd+k++ g ++nr+t++g+Wkatg+d++++s +++ Dca47145.1 11 PGFRFKPTEEELVNFYLKNTVYEKRMHV-DIIGFLNIYQHDPWDLPGLATIGEREWYFFVPRDRKSSYGGKPNRTTEHGFWKATGSDRKIFSMsePKRV 108 9*************************.99***********8777899*********************************998666778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +gl+ktLvfy+grap+g+ktdWvm+eyrl Dca47145.1 109 IGLRKTLVFYNGRAPRGSKTDWVMNEYRL 137 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.545	9	155	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-53	10	155	IPR003441	NAC domain
Pfam	PF02365	4.5E-25	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDENGANFEL PGFRFKPTEE ELVNFYLKNT VYEKRMHVDI IGFLNIYQHD PWDLPGLATI 60 GEREWYFFVP RDRKSSYGGK PNRTTEHGFW KATGSDRKIF SMSEPKRVIG LRKTLVFYNG 120 RAPRGSKTDW VMNEYRLPDN CVLHKDIVLC KIYRKATSMK ELEQRAAKEE EETTLQKSLI 180 VTPCPTSPVS SSNETTSSIN NDFGQLQDFL PSSFYTTSTC DDHQMTLKEE KFEENFEDVV 240 NNFDVGRSNR IQLPFEKDGL QELQVSKAGI DWVQDPFSLQ LCSPWFENIL NFNSPTLISQ 300 LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	11	155	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021776304.1	1e-131	NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0K9QXX3	1e-128	A0A0K9QXX3_SPIOL; Uncharacterized protein
STRING	XP_010690266.1	1e-127	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-94	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]