PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47170.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 86aa    MW: 10013.2 Da    PI: 5.0906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47170.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-075678729
                HHHHHHHHHHHHHHHHHHCTSCC CS
         HLH  7 erErrRRdriNsafeeLrellPk 29
                  Er+RR+++N++++ Lr ++P+
  Dca47170.1 56 VSERNRRKKLNERLFALRAVVPN 78
                57********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-74180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.4014986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-65281No hitNo description
Gene3DG3DSA:4.10.280.104.2E-65580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-55678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MDCFGEAEYQ LYWDTNMFFH SHEPLDSWGL EESLSTYYDS SSPDGTVSPL GSKNIVSERN  60
RRKKLNERLF ALRAVVPNIS KVFFKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332902.11e-35transcription factor bHLH35-like
SwissprotQ700E31e-25BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A151RW062e-33A0A151RW06_CAJCA; Transcription factor bHLH35
TrEMBLA0A2P6QSI02e-33A0A2P6QSI0_ROSCH; Putative transcription factor bHLH family
TrEMBLA0A4P1R0501e-33A0A4P1R050_LUPAN; Uncharacterized protein
STRINGXP_009348093.11e-34(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.21e-28bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]