PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47256.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 336aa MW: 37629.3 Da PI: 8.1339

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47256.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.7e-51	6	130	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtd+elv++yL k ++++ +l + evd++k+ePwdLp+++ + kewyf+s+rd+kyatg r+nrat sgyWkatgkd++v++ +g+ Dca47256.1 6 LPPGFRFHPTDDELVCDYLLLKWNASHSPL---LIEVDLNKCEPWDLPERACIGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAVVR-RGNM 100 79*********************99888...779********8777899***********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy+grapkg+kt+Wvmhe+rle Dca47256.1 101 VGMRKTLVFYQGRAPKGHKTQWVMHEFRLE 130 ***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-57	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	54.831	6	155	IPR003441	NAC domain
Pfam	PF02365	5.5E-26	7	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MVEAKLPPGF RFHPTDDELV CDYLLLKWNA SHSPLLIEVD LNKCEPWDLP ERACIGGKEW 60 YFYSQRDRKY ATGLRTNRAT VSGYWKATGK DRAVVRRGNM VGMRKTLVFY QGRAPKGHKT 120 QWVMHEFRLE PPFVPNNLIP SPSKEDWVLC RVFFKSKYGP ARSSSGTENH ERNNNNNNKM 180 IDEVTGSSSV VAMDNYIRFD DTTTTQANAN AYQQVPCFSM FSDNQINRNH NHNNNPTTST 240 SMVFHHNNMM MMMADDNNNN INGLGLGPNG NSKGSPSPGP GPIVACDKKV LQAVLNELTK 300 MEGNAINGSP SIGEAGSSES YLSEVGLQQP SLWSPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	2	156	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021722881.1	1e-127	NAC domain-containing protein 21/22-like isoform X1
Swissprot	Q84TE6	6e-96	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A151SW56	1e-118	A0A151SW56_CAJCA; NAC domain-containing protein 21/22
STRING	XP_010666180.1	1e-118	(Beta vulgaris)
STRING	AES66224	1e-118	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-91	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]