PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47347.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 405aa MW: 46362.8 Da PI: 6.2462

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47347.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.7e-07	69	151	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A+ +GF ++ks++k + g + C gk + k+ ++ +r+++++++++C k+k+ +dg++ v+ + HnHe++ Dca47347.1 69 AHGLGFGLCKSSNKPR---GGKEYHLIECEFGGKYRGPFKDplKVPKRKKTTTKKIQCPFKIKIVSGTDGTFAVIPMYGFHNHEMV 151 8899***9998877...334567778888888887777777889************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.6E-27	268	362	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MSSFFDDEVN DGDYEGDYAD LGDDHADLGD DNISVDQLIG DGVDYSYHFM NTLSFANMKM 60 AYTWAQAIAH GLGFGLCKSS NKPRGGKEYH LIECEFGGKY RGPFKDPLKV PKRKKTTTKK 120 IQCPFKIKIV SGTDGTFAVI PMYGFHNHEM VKFVEGHRQM TSFSDEQIDY VRVNVVSEVK 180 TANIRLGFKE KYPDQPQPNK RQFDSVVAKV RLEEMGGRTH VQQMAHLADL NRYLYFYDVE 240 GEGEDETLSR VFMVHPVALK LFKAYYYVIG IDSTYKTNAY EYAVVEIVGV TPVGKSFLIA 300 WAMMSNEKTE SYVWLLEMLR EVLGPEVSPT AFVTDRELSL MAALSVVFPT VPHLLCVWHI 360 NTAVENKAKK VFDDGLRGQR FVDYKWRRLV NMESEETYRS SWNRI

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MSSFFDDEVN DGDYEGDYAD LGDDHADLGD DNISVDQLIG DGVDYSYHFM NTLSFANMKM  60
AYTWAQAIAH GLGFGLCKSS NKPRGGKEYH LIECEFGGKY RGPFKDPLKV PKRKKTTTKK  120
IQCPFKIKIV SGTDGTFAVI PMYGFHNHEM VKFVEGHRQM TSFSDEQIDY VRVNVVSEVK  180
TANIRLGFKE KYPDQPQPNK RQFDSVVAKV RLEEMGGRTH VQQMAHLADL NRYLYFYDVE  240
GEGEDETLSR VFMVHPVALK LFKAYYYVIG IDSTYKTNAY EYAVVEIVGV TPVGKSFLIA  300
WAMMSNEKTE SYVWLLEMLR EVLGPEVSPT AFVTDRELSL MAALSVVFPT VPHLLCVWHI  360
NTAVENKAKK VFDDGLRGQR FVDYKWRRLV NMESEETYRS SWNRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-19	FAR1-related sequence 5