PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47538.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 256aa MW: 27254.9 Da PI: 8.3916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47538.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.7	4.1e-29	4	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ ++q++++ +++k++G++ +++l+++ p++ r+++++sl+ye++ r+ +P+yG+vg+++++q++l+q+++e Dca47538.1 4 SCNGCRVLRKGCNEKCKIRPCLdwiksSDSQANATVFLAKFYGRAGLINLISSGPDHLRPALFRSLLYESCGRMVNPIYGSVGLLWSGQWHLCQAAVES 102 6*******************9998777889**************************************************************998 PP DUF260 95 al 96 +l Dca47538.1 103 VL 104 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.058	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MRMSCNGCRV LRKGCNEKCK IRPCLDWIKS SDSQANATVF LAKFYGRAGL INLISSGPDH 60 LRPALFRSLL YESCGRMVNP IYGSVGLLWS GQWHLCQAAV ESVLKGLPIT PIPIEDAANP 120 PPVKGAYDIR HVPKEKASTS ADSDQTKPNQ NRFKRTGGVI KPKPTKLSSC AAKAIVALDI 180 LGKSGDVGAV NGSSTSHDSS LSHPDEVATD GNSNGNSYSS MVSMETTEAD VVERANGDGG 240 GAYLGLDLEL SLRFTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021755125.1	1e-105	LOB domain-containing protein 40-like
Swissprot	Q9M886	7e-73	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0K9REJ1	1e-100	A0A0K9REJ1_SPIOL; Uncharacterized protein
STRING	XP_010693111.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	7e-74	LOB domain-containing protein 42