PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47587.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 665aa    MW: 72536 Da    PI: 5.9538
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47587.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91.1e-13222283263
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 ++ k+  r+ +NRe+A  sRqRKk+++eeLeekvk++ +   +L  +++    e a+l++++
  Dca47587.1 222 EDEKKKARLLRNRESAHLSRQRKKQYVEELEEKVKSMVSTIADLNGKISYFMTENASLRQQL 283
                 5679999**************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-15221285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.335223283IPR004827Basic-leucine zipper domain
PfamPF001701.6E-11224283IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-12225283No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-16225284No hitNo description
CDDcd147041.00E-19226277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MEDPISYDVV GLPTPPLDDD FPLFSELGDV TAGDYGVDLD FDFDFSVDDL SFADELLLQQ  60
PDPNSDPNCG DWVNPNLADC ENNGSFEDGV RVYDCSSNQE ISSSKDSNTQ LKFDSPEIGC  120
SKSNSGELSG NFCDRDVSSD DCDNNAVNLD LGRKSTSNEL AKSSNLNSVS KSKRKKDVEH  180
DHAAEIRSNK FRRSNSNANV NANANAKANV VSSDENVIEG DEDEKKKARL LRNRESAHLS  240
RQRKKQYVEE LEEKVKSMVS TIADLNGKIS YFMTENASLR QQLSGGVVGP AMYPMAPMPY  300
PWMPCPPGYM NYSRGSNVPL VPIPRVRPQQ PAPAPKVKKP SKGDSKTKTK KVASVSLLGL  360
LFFMLLFGGI LPMVSVRYGT AGNKFGAVHK GTVFKFDHGR VLQQSNSSNG NTSEPLVASL  420
YVPRNDRMVK IDGNLIIHSI LASERAMASN SVDGPKTSEE ETGLVVHGSH PPYPTPGPGS  480
NDWRHPHLDR NHNGRQRALG SGSSDFTPIG ADGRLQQWFR EGLAGPMLSS GMCTEVFQFE  540
VSPTPGSIVP ATSSMANLTS EDRLNYTRPN KTKNRRILPG HTLPLNDRNP NTTAEPVQPH  600
ERNEGLQSNK SSSSVVVSVL VDPREVGDGN GEGVLGSKTL SRIFVVVLID SVKYVTYSCM  660
LPFMG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840232.10.0bZIP transcription factor 17-like
TrEMBLA0A0K9QEM40.0A0A0K9QEM4_SPIOL; Uncharacterized protein
STRINGXP_010673077.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-67bZIP family protein