PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47714.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 309aa    MW: 34597.9 Da    PI: 6.6308
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47714.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072592912254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp+++++++L +++gL+ +q+ +WF N+R +
  Dca47714.1 259 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 291
                 58*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-164286IPR005540KNOX1
PfamPF037906.5E-164485IPR005540KNOX1
SMARTSM012561.9E-23102157IPR005541KNOX2
PfamPF037911.1E-18105156IPR005541KNOX2
PROSITE profilePS512139.114212232IPR005539ELK domain
PROSITE profilePS5007111.661232295IPR001356Homeobox domain
SMARTSM003899.2E-11234299IPR001356Homeobox domain
SuperFamilySSF466893.98E-16234299IPR009057Homeodomain-like
CDDcd000862.02E-11235296No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25239298IPR009057Homeodomain-like
PfamPF059201.1E-17252291IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQEQGLGMIG SSVVVGGGGG GGGGGGIGGL MGGEMGFSDE YRQLKAEIVT HPLYEQVLGA  60
HVACLRVATP IDQLSLIDAQ LSHSHAILRS YASHHTNHNN NHSFSPHDRQ DLDNFLAQYL  120
LVLCSFREQL QQHVRVHAVE AVMACREIEQ NLQNLTGVTL EGGTGATMSD DEDEMQLDYS  180
MDQLGGDAND LMMGFGLPTE SERSLMERVR HELKLELKQG FKSKIEDVRE EILRKRRAGK  240
LPGDTTSVLK SWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHNNAQSV  300
NSLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13235291864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288308RKRNWHNNAQSVNSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735936.11e-175homeobox protein HD1-like
SwissprotQ9FPQ81e-152KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0K9RVV31e-172A0A0K9RVV3_SPIOL; Uncharacterized protein
STRINGGorai.003G163800.11e-168(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-151KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]