PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47779.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 183aa    MW: 19749.3 Da    PI: 7.9259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47779.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.3e-12428226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C+f+++tG Cky ++C+++H+
  Dca47779.1  4 GEVDCPFYMKTGSCKYAANCRYNHP 28
                6789********************9 PP
2zf-CCCH38.12.5e-1284108226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C+f+++ G+C++G+ CkF H+
  Dca47779.1  84 GQSACDFYMKAGICNFGEACKFDHP 108
                 7789********************9 PP
3zf-CCCH38.51.9e-12133154627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+f+++tGtCkyG +Ck+ H+p
  Dca47779.1 133 CPFYMKTGTCKYGVTCKYDHPP 154
                 ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.136230IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6229IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5729IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4828IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.11782110IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-682109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-683110IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-1084108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-488108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094127155IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6127154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6131154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5133152IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10133154IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRSGEVDCPF YMKTGSCKYA ANCRYNHPDR NDINPPVASL LASPIANLPM GLVSSAAAIL  60
QSFQPSLAQT TLGLGAVNYP QRPGQSACDF YMKAGICNFG EACKFDHPVD RSASKNVKLT  120
LAGYPRREGA VHCPFYMKTG TCKYGVTCKY DHPPPGEVVA ATGKENAETT KEAKENKEND  180
ESA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.13e-79PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_010260865.13e-79PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q32e-69C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1U8A3F17e-78A0A1U8A3F1_NELNU; zinc finger CCCH domain-containing protein 37 isoform X1
TrEMBLA0A1U8AEV76e-78A0A1U8AEV7_NELNU; zinc finger CCCH domain-containing protein 37 isoform X2
TrEMBLV4S9N12e-78V4S9N1_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_010260864.11e-78(Nelumbo nucifera)
STRINGXP_006422335.13e-79(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-69floral homeotic protein (HUA1)