PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47780.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 256aa    MW: 28784 Da    PI: 6.7754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47780.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.4e-11148172226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++ t tC++Gd+CkF H+
  Dca47780.1 148 GEKDCAHYMLTRTCRFGDTCKFDHP 172
                 7889********************8 PP
2zf-CCCH37.15.3e-12224248327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+f+ +tG Ck+G++CkF+H++
  Dca47780.1 224 EPNCSFYVKTGKCKFGASCKFHHPK 248
                 799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.178146174IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5147173IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094221249IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5221248IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9224248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5227247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MANHHLYGQH HRSNNPYSSS RSSVDKSSYY SDHSSSSRYY SSSYNDPLYL SSDTAPYSSY  60
APSSSVTAAF RDGSSPYSKR PSEGARPYEV SDLMKCLTSM RYVLLNHCIA LILLENHQSD  120
AWLASDSLAK RPKFQSACNL PVYPQRPGEK DCAHYMLTRT CRFGDTCKFD HPIWVPEGGI  180
PDWKEIQLPP IPSDFHPERP GELDCPAVSD QTETAADLPE RPSEPNCSFY VKTGKCKFGA  240
SCKFHHPKDI QIPLDE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693153.12e-68PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-59C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0J8BGV75e-67A0A0J8BGV7_BETVU; Uncharacterized protein
STRINGXP_010693153.18e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-60floral homeotic protein (HUA1)