PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47858.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 281aa    MW: 31695.6 Da    PI: 4.5293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47858.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-093341245
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     lv a+  +G++ W+ Ia++++ gRt++ +k++++
       Dca47858.1  3 LVAAHMVFGNR-WAEIANYIP-GRTDNTIKNYFN 34
                     89*********.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855141IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-11338IPR009057Homeodomain-like
PfamPF002491.2E-7334IPR001005SANT/Myb domain
CDDcd001672.87E-6334No hitNo description
SuperFamilySSF466893.67E-8343IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNLVAAHMVF GNRWAEIANY IPGRTDNTIK NYFNATIRRQ TRRMKETTNG NSKGFKQPSI  60
LQLYTDSLPS SSNYASTRKR STATTATLKR MLPTNSKAAD ISRDDSPSQY GNIPPLCPSS  120
NNEHNFQSLN NSNNSPLFVT NPSNNNNEVV VVNMQQPSMI NNNNHHLNGG YTPTYDFQFI  180
DEPNDDSLST LMDLLRSLDP NEICEDNNDY QQIQNININN NISTNTTSSN SSNNNSNNGL  240
PDIPMVDSQP YDQEEYNEDI FSSEKFEEDM AFLHNLMSLL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-15myb domain protein 119